species:   Artha
pid:       MI0005394
parent:    ath-MIR838
paralog:   
locus:     1:28500-28706
matures:   ['UUUUCUUCUACUUCUUGCACA', 'UGCAAGAAGGAGAAGCAAAGU']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 1:28500-28706

0 out of bounds
42 alignments
42 proper strand
38 stranded perfect matches

                                                   ***********************                                                           ***********************                                                   
UACUUUUCUAAUAUCACGAGGACUUACAUGGCCUCAAGUCACCUGUGGUGUUGUGCAAGAAGGAGAAGCAAAGUCUGUCUAUGUAUUAUGAGAUAGCUACUUCUAUGGCUAGGAUAUAUGUUGUACAAGACCGGCUUUUCUUCUACUUCUUGCACAACCUGAGGUUAUUGAGGCUAUACAAGUCUUCUUCUAUAAUGUUAUUUAUUA
.................((((((((..((((((((((...((((..((.(((((((((((((.(((((.((((((.((((.(((((((((...((((((......))))))...))))....))))))))).)))))).))))).))))))))))))))).))))..))))))))))..))))))))....................
---------------------------------------------------------------------------------------------------------------------------------------UUUUCUUCUACUUCUUGCACA--------------------------------------------------- l=21 a=24 c
-----------------------------------------------------UGCAAGAAGGAGAAGCAAAGU------------------------------------------------------------------------------------------------------------------------------------- l=21 a=7 c*
---------------------------------------------------------------------------------------------------------------------------------------UUUUCUUCUACUUCUUGCACA--------------------------------------------------- l=21 a=24 ma
-----------------------------------------------------UGCAAGAAGGAGAAGCAAAGU------------------------------------------------------------------------------------------------------------------------------------- l=21 a=7 ma*

----------------------------UGGCCUCAAGUCACCUGUGGUGUUGUGCAAGAAGGAGAAG------------------------------------------------------------------------------------------------------------------------------------------- l=40 a=1 
---------------------------------UCAAGUCACCUGUGGUGUUG---------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=2 
-----------------------------------AAGUCACCUGUGGUGUUGUGCA------------------------------------------------------------------------------------------------------------------------------------------------------ l=22 a=2 
-----------------------------------AAGUCACCUGUGGUGUUGUGCg------------------------------------------------------------------------------------------------------------------------------------------------------ l=22 a=1 
-----------------------------------------------------UGCAAGAAGGAGAAGCAAAGc------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-----------------------------------------------------UGCAAGAAGGAGAAGCAAAGU------------------------------------------------------------------------------------------------------------------------------------- l=21 a=7 (c*,ma*)
---------------------------------------------------------------------------------------------------------------------------------------UUUUCUUCUACUUCUUGCAC---------------------------------------------------- l=20 a=2 
---------------------------------------------------------------------------------------------------------------------------------------UUUUCUUCUACUUCUUGCACA--------------------------------------------------- l=21 a=24 (c,ma)
---------------------------------------------------------------------------------------------------------------------------------------UUUUCUUCUgCUUCUUGCACA--------------------------------------------------- l=21 a=1 
---------------------------------------------------------------------------------------------------------------------------------------UUUUCUUCUACUUCUUGCACg--------------------------------------------------- l=21 a=1 

mb-01111
ax-1111111
ku-01
ss-111111111111
fn-111
